Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 30 curated entries in PaperBLAST's database that match '1.13.11.11' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Halomonas desiderata SP1, or try another query

kynA BZY95_RS01805 BZY95_01815 WP_086508296.1: tryptophan 2,3-dioxygenase
is similar to:
PaperBLAST

RR42_RS15390: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Cupriavidus basilensis

55% id,
97% cov

PfGW456L13_4292: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas fluorescens

54% id,
93% cov

T23O_CUPMC / Q1LK00: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Cupriavidus metallidurans
kynA: tryptophan 2,3-dioxygenase; EC 1.13.11.11 from Ralstonia metallidurans

55% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory