Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS15665 BZY95_15740 WP_086510832.1: NAD-glutamate dehydrogenase
is similar to:		 PaperBLAST

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

 77% id,
100% cov

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

 54% id,
99% cov

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

 54% id,
99% cov

More...

gdhA BZY95_RS14990 BZY95_15065 WP_086510711.1: NADP-specific glutamate dehydrogenase
is similar to:		 PaperBLAST

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

 53% id,
100% cov

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from [Clostridium] symbiosum

 50% id,
99% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

 31% id,
99% cov

More...

BZY95_RS00680 BZY95_00685 WP_086508080.1: Glu/Leu/Phe/Val dehydrogenase
is similar to:		 PaperBLAST

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

 44% id,
98% cov

DHE2_PYRCJ / A3MUY9: NAD(+)-dependent glutamate dehydrogenase; NAD-GDH; NAD-specific glutamate dehydrogenase; EC 1.4.1.2 from Pyrobaculum calidifontis
A3MUY9: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum calidifontis

 46% id,
92% cov

Q9Y8I4: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum islandicum

 43% id,
97% cov

More...

BZY95_RS18440 BZY95_18545 WP_086511351.1: Glu/Leu/Phe/Val dehydrogenase
is similar to:		 PaperBLAST

GDH2 / Q38946: glutamate dehydrogenase β subunit (EC 1.4.1.2) from Arabidopsis thaliana

 32% id,
77% cov

Q977U6: glutamate dehydrogenase (EC 1.4.1.2) from Haloferax mediterranei

 30% id,
79% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

 27% id,
83% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory