Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS08665 BZY95_08695 WP_086509542.1: NADH:flavin oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

29% id,
40% cov

sthA BZY95_RS04225 BZY95_04240 WP_086508722.1: Si-specific NAD(P)(+) transhydrogenase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

28% id,
37% cov

BZY95_RS15950 BZY95_16030 WP_086510887.1: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

27% id,
28% cov

dgcA BZY95_RS06230 BZY95_06250 WP_086509106.1: dimethylglycine demethylation protein DgcA
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

37% id,
19% cov

BZY95_RS02655 BZY95_02665 WP_086508467.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

50% id,
8% cov

BZY95_RS03135 BZY95_03145 WP_306766553.1: NADPH-dependent 2,4-dienoyl-CoA reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

45% id,
9% cov

BZY95_RS05900 BZY95_05920 WP_306766560.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

51% id,
8% cov

BZY95_RS13790 BZY95_13865 WP_086510494.1: sarcosine oxidase subunit alpha family protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

44% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory