Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 63 curated entries in PaperBLAST's database that match '2.4.2.1' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Halomonas desiderata SP1, or try another query

deoD BZY95_RS14220 BZY95_14300 WP_086510571.1: purine-nucleoside phosphorylase
is similar to:
PaperBLAST

DEOD_SALTY / Q8ZJV7: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Salmonella typhimurium

70% id,
99% cov

DEOD_ECOLI / P0ABP8: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Escherichia coli
Pup / b4384: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli
deoD / RF|NP_418801: purine nucleoside phosphorylase deoD-type; EC 2.4.2.1 from Escherichia coli
deoD / P0ABP8: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli

69% id,
99% cov

C8CPR9: purine-nucleoside phosphorylase (EC 2.4.2.1) from Pseudoalteromonas sp.

55% id,
100% cov

More...

pgeF BZY95_RS19620 BZY95_19735 WP_086511577.1: peptidoglycan editing factor PgeF
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli
yfiH / P33644: purine nucleoside phosphorylase YfiH (EC 2.4.2.1; EC 2.4.2.28; EC 3.5.4.4; EC 1.10.3.2) from Escherichia coli

47% id,
98% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

35% id,
93% cov

PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.1; EC 2.4.2.28 from Unknown prokaryotic

31% id,
95% cov

More...

tpiA BZY95_RS13595 BZY95_13670 WP_086510460.1: triose-phosphate isomerase
is similar to:
PaperBLAST

P00941: purine-nucleoside phosphorylase (EC 2.4.2.1) from Homo sapiens

41% id,
96% cov

BZY95_RS14225 BZY95_14305 WP_086510572.1: phosphopentomutase
is similar to:
PaperBLAST

A0A518Y5Z2: purine-nucleoside phosphorylase (EC 2.4.2.1) from Helicobacter pylori

54% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory