Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 13 curated entries in PaperBLAST's database that match '2.6.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Halomonas desiderata SP1, or try another query

gabT BZY95_RS15480 BZY95_15555 WP_086510803.1: 4-aminobutyrate--2-oxoglutarate transaminase
is similar to:		 PaperBLAST

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 51% id,
100% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 51% id,
99% cov

GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli
GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli
gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli

 50% id,
99% cov

More...

BZY95_RS01045 BZY95_01050 WP_086508150.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 38% id,
94% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 37% id,
95% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 37% id,
93% cov

More...

ectB BZY95_RS18280 BZY95_18385 WP_086511325.1: diaminobutyrate--2-oxoglutarate transaminase
is similar to:		 PaperBLAST

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 35% id,
98% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 34% id,
98% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 35% id,
96% cov

More...

BZY95_RS02535 BZY95_02545 WP_086508434.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 35% id,
93% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 36% id,
90% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 35% id,
90% cov

More...

bioA BZY95_RS10115 BZY95_10145 WP_086509812.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:		 PaperBLAST

GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli
GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli
gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli

 32% id,
94% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 29% id,
92% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 29% id,
89% cov

More...

BZY95_RS11580 BZY95_11615 WP_086510079.1: aminotransferase
is similar to:		 PaperBLAST

GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

 32% id,
92% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 31% id,
94% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 31% id,
93% cov

More...

BZY95_RS10460 BZY95_10490 WP_086509870.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

 31% id,
93% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 29% id,
96% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 28% id,
96% cov

More...

BZY95_RS09090 BZY95_09120 WP_086509625.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 31% id,
94% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 30% id,
94% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 30% id,
94% cov

More...

hemL BZY95_RS22410 BZY95_12295 WP_176342865.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:		 PaperBLAST

GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

 30% id,
92% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 29% id,
92% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 29% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory