Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 4 curated entries in PaperBLAST's database that match '3.1.1.68' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS16655 BZY95_16750 WP_086511018.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

Ga0059261_1893: Xylonolactonase (EC 3.1.1.68) from Sphingomonas koreensis

39% id,
97% cov

XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii
D4GP31: L-arabinonolactonase (EC 3.1.1.15); xylono-1,4-lactonase (EC 3.1.1.68) from Haloferax volcanii

34% id,
97% cov

BZY95_RS16570 BZY95_16665 WP_086510992.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

Ga0059261_1893: Xylonolactonase (EC 3.1.1.68) from Sphingomonas koreensis

40% id,
95% cov

XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii
D4GP31: L-arabinonolactonase (EC 3.1.1.15); xylono-1,4-lactonase (EC 3.1.1.68) from Haloferax volcanii

33% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory