Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 3 curated entries in PaperBLAST's database that match '3.5.1.47' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS04885 BZY95_04900 WP_086508853.1: M20 aminoacylase family protein
is similar to:
PaperBLAST

DAPEL_BACSU / O34916: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Bacillus subtilis
ykuR / O34916: N-acetyl-diaminopimelate deacetylase (EC 3.5.1.47) from Bacillus subtilis

35% id,
97% cov

DAPEL_PRIM1 / D5E0A1: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Priestia megaterium

33% id,
99% cov

BZY95_RS05965 BZY95_05985 WP_086509057.1: M20 aminoacylase family protein
is similar to:
PaperBLAST

DAPEL_BACSU / O34916: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Bacillus subtilis
ykuR / O34916: N-acetyl-diaminopimelate deacetylase (EC 3.5.1.47) from Bacillus subtilis

35% id,
94% cov

DAPEL_PRIM1 / D5E0A1: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Priestia megaterium

32% id,
96% cov

BZY95_RS19380 BZY95_19495 WP_254914255.1: amidohydrolase
is similar to:
PaperBLAST

DAPEL_BACSU / O34916: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Bacillus subtilis
ykuR / O34916: N-acetyl-diaminopimelate deacetylase (EC 3.5.1.47) from Bacillus subtilis

35% id,
79% cov

DAPEL_PRIM1 / D5E0A1: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Priestia megaterium

36% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory