Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 17 curated entries in PaperBLAST's database that match '3.7.1.3' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Halomonas desiderata SP1, or try another query

kynU BZY95_RS01815 BZY95_01825 WP_086508298.1: kynureninase
is similar to:
PaperBLAST

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis

49% id,
99% cov

BPHYT_RS16030: Kynureninase (EC 3.7.1.3) from Burkholderia phytofirmans

47% id,
99% cov

KYNU_PSEFL / P83788: Kynureninase; L-kynurenine hydrolase; EC 3.7.1.3 from Pseudomonas fluorescens
kyn / P83788: kynureninase subunit (EC 3.7.1.3) from Pseudomonas fluorescens

47% id,
100% cov

More...

BZY95_RS00945 BZY95_00950 WP_086508132.1: aminotransferase class V-fold PLP-dependent enzyme
is similar to:
PaperBLAST

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis

24% id,
89% cov

BPHYT_RS16030: Kynureninase (EC 3.7.1.3) from Burkholderia phytofirmans

29% id,
56% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory