Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 6 curated entries in PaperBLAST's database that match '4.1.1.44' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS03565 BZY95_03580 WP_086508611.1: alpha/beta fold hydrolase
is similar to:
PaperBLAST

Q6SJA7: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sulfitobacter sp.

49% id,
92% cov

Q6SJC5: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Roseovarius nubinhibens

49% id,
83% cov

Q6SJB9: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Ruegeria pomeroyi

43% id,
90% cov

More...

BZY95_RS16355 BZY95_16445 WP_086510955.1: carboxymuconolactone decarboxylase family protein
is similar to:
PaperBLAST

Q6SJB9: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Ruegeria pomeroyi

30% id,
71% cov

Q6SJA7: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sulfitobacter sp.

27% id,
75% cov

Q6SJC5: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Roseovarius nubinhibens

31% id,
52% cov

BZY95_RS12640 BZY95_12680 WP_086510282.1: alpha/beta hydrolase
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

23% id,
63% cov

BZY95_RS01715 BZY95_01725 WP_086508279.1: carboxymuconolactone decarboxylase family protein
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

40% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory