Curated BLAST
Searching in Billgrantia desiderata SP1 (GCF_002151265.1)
Found 11 curated entries in PaperBLAST's database that match '4.2.1.41' as complete word(s).
These curated entries have 9 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Billgrantia desiderata SP1, or try another query
kdgD BZY95_RS14805 BZY95_14880 WP_086510679.1: 5-dehydro-4-deoxyglucarate dehydratase
is similar to: | PaperBLAST |
Q8UB77: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Agrobacterium fabrum | 51% id,
96% cov |
KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC 4.2.1.41 from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC 4.2.1.41) from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Acinetobacter baylyi | 51% id,
95% cov |
HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae | 48% id,
98% cov |
BPHYT_RS24155: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Burkholderia phytofirmans | 49% id,
96% cov |
PS417_04195: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas simiae | 48% id,
95% cov |
A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans | 48% id,
95% cov |
PP_3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas putida | 48% id,
95% cov |
Pf1N1B4_1110: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas fluorescens | 48% id,
95% cov |
B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni | 46% id,
96% cov |
More... |
dapA BZY95_RS18815 BZY95_18930 WP_010629732.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to: | PaperBLAST |
Pf1N1B4_1110: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas fluorescens | 27% id,
95% cov |
PP_3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas putida | 28% id,
92% cov |
PS417_04195: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas simiae | 27% id,
92% cov |
HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae | 29% id,
83% cov |
B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni | 26% id,
91% cov |
BPHYT_RS24155: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Burkholderia phytofirmans | 25% id,
93% cov |
KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC 4.2.1.41 from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC 4.2.1.41) from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Acinetobacter baylyi | 29% id,
76% cov |
A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans | 30% id,
65% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory