Searching in Halomonas desiderata SP1 (GCF_002151265.1)
Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).
These curated entries have 4 distinct sequences.
Running ublast with E ≤ 0.01
Found 6 relevant proteins in Halomonas desiderata SP1, or try another query
| BZY95_RS06185 BZY95_06205 WP_086509098.1: altronate dehydratase family protein is similar to: | PaperBLAST |
PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae | 35% id, 95% cov |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 34% id, 96% cov |
GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli | 34% id, 93% cov |
| BZY95_RS14785 BZY95_14860 WP_086510675.1: mandelate racemase/muconate lactonizing enzyme family protein is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 34% id, 81% cov |
| BZY95_RS20345 BZY95_20465 WP_086511713.1: muconate/chloromuconate family cycloisomerase is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 25% id, 88% cov |
| dgoD BZY95_RS06130 BZY95_06150 WP_086509088.1: galactonate dehydratase is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 29% id, 74% cov |
| BZY95_RS20810 BZY95_20930 WP_086511801.1: L-fuconate dehydratase is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 34% id, 56% cov |
| manD BZY95_RS16140 BZY95_16225 WP_086510919.1: D-mannonate dehydratase ManD is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 29% id, 40% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 649-1866 (frame -3) on NZ_MUMZ01000145.1 Halomonas desiderata SP1 contig_145, whole genome shotgun sequence is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 25% id, 96% cov |
Lawrence Berkeley National Laboratory