Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 7 curated entries in PaperBLAST's database that match '4.2.1.68' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS20810 BZY95_20930 WP_086511801.1: L-fuconate dehydratase
is similar to:
PaperBLAST

HSERO_RS05235: L-fuconate dehydratase (EC 4.2.1.68) from Herbaspirillum seropedicae

61% id,
100% cov

ENOF1_HUMAN / Q7L5Y1: Mitochondrial enolase superfamily member 1; Antisense RNA to thymidylate synthase; rTS; L-fuconate dehydratase; EC 4.2.1.68 from Homo sapiens

60% id,
97% cov

G3Y683: L-fuconate dehydratase (EC 4.2.1.68) from Aspergillus niger

58% id,
96% cov

More...

BZY95_RS06185 BZY95_06205 WP_086509098.1: altronate dehydratase family protein
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

29% id,
91% cov

dgoD BZY95_RS06130 BZY95_06150 WP_086509088.1: galactonate dehydratase
is similar to:
PaperBLAST

ENOF1_HUMAN / Q7L5Y1: Mitochondrial enolase superfamily member 1; Antisense RNA to thymidylate synthase; rTS; L-fuconate dehydratase; EC 4.2.1.68 from Homo sapiens

25% id,
56% cov

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris
fucD / Q8P3K2: L-fuconate dehydratase monomer (EC 4.2.1.68) from Xanthomonas campestris

27% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory