Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Halomonas desiderata SP1, or try another query

hutH BZY95_RS09370 BZY95_09400 WP_086509676.1: histidine ammonia-lyase
is similar to:
PaperBLAST

Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

77% id,
100% cov

PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

76% id,
100% cov

HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida
hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida

75% id,
100% cov

More...

hutH BZY95_RS09375 BZY95_09405 WP_086509677.1: histidine ammonia-lyase
is similar to:
PaperBLAST

AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

60% id,
98% cov

Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

59% id,
97% cov

Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis

39% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory