Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 61 curated entries in PaperBLAST's database that match '5.4.99.5' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Halomonas desiderata SP1, or try another query

pheA BZY95_RS05310 BZY95_05330 WP_086508931.1: prephenate dehydratase
is similar to:
PaperBLAST

CMPDT_STUST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Stutzerimonas stutzeri

72% id,
99% cov

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

32% id,
97% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

32% id,
97% cov

More...

aroQ BZY95_RS18095 BZY95_18200 WP_086511287.1: gamma subclass chorismate mutase AroQ
is similar to:
PaperBLAST

Q2SY64: chorismate mutase (EC 5.4.99.5) from Burkholderia thailandensis

42% id,
73% cov

CHMU_PSEAE / Q9HU05: Monofunctional chorismate mutase; EC 5.4.99.5 from Pseudomonas aeruginosa

32% id,
90% cov

B2JYH9: chorismate mutase (EC 5.4.99.5) from Paraburkholderia phymatum

30% id,
92% cov

More...

trpE BZY95_RS19935 BZY95_20050 WP_086511648.1: anthranilate synthase component I
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

33% id,
64% cov

pabB BZY95_RS20045 BZY95_20160 WP_086511656.1: aminodeoxychorismate synthase component I
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

29% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory