Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 23 curated entries in PaperBLAST's database that match '6.1.1.23' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Halomonas desiderata SP1, or try another query

aspS BZY95_RS18410 BZY95_18515 WP_086511348.1: aspartate--tRNA ligase is similar to:	PaperBLAST
SYDND_PSEAE / Q51422: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa	75% id, 100% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	62% id, 100% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	55% id, 99% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	54% id, 98% cov
SYDND_HELPY / P56459: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori	52% id, 100% cov
DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris	53% id, 95% cov
Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus	51% id, 98% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	51% id, 99% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	48% id, 99% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	48% id, 91% cov
Dshi_2633: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Dinoroseobacter shibae	42% id, 99% cov
PGA1_c24530: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Phaeobacter inhibens	42% id, 98% cov
CCNA_01969: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus	41% id, 99% cov
SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus	36% id, 69% cov
SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei	34% id, 66% cov
CCNA_01969: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus	50% id, 42% cov
SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum	31% id, 63% cov
SYDND_DEIRA / Q9RVH4: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase 2; AspRS2; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Deinococcus radiodurans aspS2 / Q9RVH4: aspartyl-tRNA synthetase, non-discriminating (EC 6.1.1.23) from Deinococcus radiodurans	31% id, 62% cov
erdS / Q4WKG3: aspartate--tRNA ligase/ergosteryl-3β-O-L-aspartate synthase (EC 6.1.1.23; EC 2.3.2.37) from Aspergillus fumigatus	28% id, 31% cov
More...

lysS BZY95_RS05635 BZY95_05655 WP_086508996.1: lysine--tRNA ligase is similar to:	PaperBLAST
SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum	26% id, 94% cov
SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus	26% id, 90% cov
SYDND_HELPY / P56459: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori	25% id, 71% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	26% id, 57% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	25% id, 58% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	25% id, 57% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	26% id, 54% cov
erdS / Q4WKG3: aspartate--tRNA ligase/ergosteryl-3β-O-L-aspartate synthase (EC 6.1.1.23; EC 2.3.2.37) from Aspergillus fumigatus	25% id, 56% cov
SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei	27% id, 50% cov
SYDND_PSEAE / Q51422: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa	28% id, 49% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	28% id, 48% cov
Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus	27% id, 47% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	28% id, 45% cov
DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris	25% id, 42% cov
DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris	27% id, 35% cov
SYDND_PSEAE / Q51422: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa	27% id, 29% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	26% id, 30% cov
PGA1_c24530: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Phaeobacter inhibens	29% id, 26% cov
Dshi_2633: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Dinoroseobacter shibae	28% id, 26% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	29% id, 23% cov
C4LZN0: aspartate-tRNA ligase (EC 6.1.1.12); aspartate-tRNAAsn ligase (EC 6.1.1.23) from Entamoeba histolytica	30% id, 19% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	31% id, 16% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	29% id, 16% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	29% id, 15% cov
Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus	32% id, 14% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	29% id, 14% cov
CCNA_01969: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus	30% id, 14% cov
More...

BZY95_RS21935 BZY95_22055 WP_306766586.1: amino acid--tRNA ligase-related protein is similar to:	PaperBLAST
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	32% id, 15% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	31% id, 13% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	28% id, 12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory