Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 117 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 85 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Halomonas desiderata SP1, or try another query

glnA BZY95_RS14880 BZY95_14955 WP_086510693.1: glutamate--ammonia ligase
is similar to:		 PaperBLAST

GLN1B_PSETA / Q3V5W6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Pseudomonas taetrolens

 74% id,
100% cov

glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Escherichia coli
glnA / P0A9C5: glutamine synthetase (EC 6.3.1.2) from Escherichia coli

 69% id,
100% cov

GLN1B_SALTY / P0A1P6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Salmonella typhimurium
glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Salmonella enterica
P0A1P6: glutamine synthetase (EC 6.3.1.2) from Salmonella enterica

 69% id,
100% cov

More...

BZY95_RS02000 BZY95_02010 WP_086508337.1: glutamine synthetase
is similar to:		 PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

 36% id,
97% cov

C4L2T5: glutamine synthetase (EC 6.3.1.2) from Exiguobacterium sp.

 32% id,
100% cov

GLNA_THEKO / O08467: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Thermococcus kodakarensis
O08467: glutamine synthetase (EC 6.3.1.2) from Pyrococcus sp.

 32% id,
94% cov

More...

BZY95_RS10470 BZY95_10500 WP_086509872.1: glutamine synthetase family protein
is similar to:		 PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

 36% id,
94% cov

GLNA_METJA / Q60182: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Methanocaldococcus jannaschii
Q60182: glutamine synthetase (EC 6.3.1.2) from Methanocaldococcus jannaschii

 32% id,
98% cov

GLNA_THET8 / Q5SIP0: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Thermus thermophilus

 32% id,
96% cov

More...

BZY95_RS10505 BZY95_10535 WP_086509879.1: glutamine synthetase family protein
is similar to:		 PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

 31% id,
96% cov

Q0E5H7: glutamine synthetase (EC 6.3.1.2) from Halobacillus halophilus

 31% id,
97% cov

P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei

 30% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

71794-73302 (frame +1) on NZ_MUMZ01000065.1 Halomonas desiderata SP1 contig_65, whole genome shotgun sequence
is similar to:		 PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

 36% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory