Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 21 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Halomonas desiderata SP1, or try another query

gcvH BZY95_RS18720 BZY95_18835 WP_086511407.1: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

60% id,
99% cov

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

58% id,
100% cov

GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis

51% id,
99% cov

More...

aceF BZY95_RS21055 BZY95_21175 WP_086511850.1: dihydrolipoyllysine-residue acetyltransferase
is similar to:
PaperBLAST

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

32% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory