Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 1 curated entries in PaperBLAST's database that match 'N-acetyl-LL-diaminopimelate aminotransferase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS13490 BZY95_13565 WP_086510442.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

35% id,
91% cov

dapC BZY95_RS07615 BZY95_07635 WP_086509348.1: succinyldiaminopimelate transaminase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

24% id,
90% cov

BZY95_RS16860 BZY95_16955 WP_086511056.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

23% id,
79% cov

BZY95_RS05445 BZY95_05465 WP_086508963.1: PatB family C-S lyase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

26% id,
53% cov

BZY95_RS02085 BZY95_02095 WP_086508354.1: DegT/DnrJ/EryC1/StrS family aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

23% id,
40% cov

BZY95_RS22475 BZY95_18765 WP_176342930.1: DegT/DnrJ/EryC1/StrS family aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

25% id,
37% cov

rffA BZY95_RS05025 BZY95_05040 WP_086508881.1: dTDP-4-amino-4,6-dideoxygalactose transaminase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

32% id,
28% cov

BZY95_RS18605 BZY95_18710 WP_086511384.1: DegT/DnrJ/EryC1/StrS aminotransferase family protein
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

26% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory