Curated BLAST for Genomes

 

Curated BLAST

Searching in Halomonas desiderata SP1 (GCF_002151265.1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Halomonas desiderata SP1, or try another query

BZY95_RS00725 BZY95_00730 WP_086508088.1: MFS transporter
is similar to:
PaperBLAST

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

23% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory