Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum aquaticum IEH 4430 (GCF_002213425.1)

Found 13 curated entries in PaperBLAST's database that match '1.1.2.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Herbaspirillum aquaticum IEH 4430, or try another query

CEJ45_RS14000 CEJ45_14005 WP_088755702.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

 51% id,
94% cov

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

 49% id,
95% cov

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana

 46% id,
81% cov

More...

CEJ45_RS15240 CEJ45_15245 WP_088755932.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

 36% id,
88% cov

YN53_SCHPO / Q9C1X2: Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe

 34% id,
90% cov

DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

 32% id,
94% cov

More...

CEJ45_RS09745 CEJ45_09755 WP_088754936.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

 35% id,
88% cov

DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

 32% id,
94% cov

YN53_SCHPO / Q9C1X2: Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe

 35% id,
86% cov

More...

CEJ45_RS13990 CEJ45_13995 WP_088755700.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

 29% id,
94% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

 30% id,
84% cov

W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta

 30% id,
83% cov

More...

CEJ45_RS08600 CEJ45_08610 WP_088754739.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

 29% id,
94% cov

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

 31% id,
81% cov

YN53_SCHPO / Q9C1X2: Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe

 29% id,
81% cov

More...

CEJ45_RS16430 CEJ45_16430 WP_088756132.1: FAD/FMN-binding oxidoreductase
is similar to:		 PaperBLAST

YN53_SCHPO / Q9C1X2: Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe

 25% id,
37% cov

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana

 30% id,
28% cov

DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

 26% id,
29% cov

More...

glcE CEJ45_RS13985 CEJ45_13990 WP_088755699.1: glycolate oxidase subunit GlcE
is similar to:		 PaperBLAST

LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens
LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens
Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens

 27% id,
34% cov

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana

 27% id,
27% cov

W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta

 28% id,
26% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

198610-200169 (frame -2) on NZ_NJGV01000007.1 Herbaspirillum aquaticum strain IEH 4430 Scaffold6_1, whole genome shotgun sequence
is similar to:		 PaperBLAST

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

 35% id,
89% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio
Also see hits to annotated proteins above

 29% id,
96% cov

231829-233274 (frame +1) on NZ_NJGV01000006.1 Herbaspirillum aquaticum strain IEH 4430 Scaffold5_1, whole genome shotgun sequence
is similar to:		 PaperBLAST

DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

 28% id,
97% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio
Also see hits to annotated proteins above

 25% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory