Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum aquaticum IEH 4430 (GCF_002213425.1)

Found 19 curated entries in PaperBLAST's database that match '1.1.99.6' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Herbaspirillum aquaticum IEH 4430, or try another query

CEJ45_RS13990 CEJ45_13995 WP_088755700.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

RR42_RS17300: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Cupriavidus basilensis

 74% id,
100% cov

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 64% id,
95% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 49% id,
96% cov

More...

glcF CEJ45_RS13980 CEJ45_13985 WP_088755698.1: glycolate oxidase subunit GlcF
is similar to:		 PaperBLAST

RR42_RS17315: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Cupriavidus basilensis

 67% id,
100% cov

Psest_3839: D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 56% id,
100% cov

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

 45% id,
96% cov

More...

glcE CEJ45_RS13985 CEJ45_13990 WP_088755699.1: glycolate oxidase subunit GlcE
is similar to:		 PaperBLAST

RR42_RS17310: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Cupriavidus basilensis

 58% id,
98% cov

Psest_3840: D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 50% id,
97% cov

PGA1_c29710: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Phaeobacter inhibens

 36% id,
98% cov

More...

CEJ45_RS14000 CEJ45_14005 WP_088755702.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

 33% id,
98% cov

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 32% id,
100% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 34% id,
91% cov

More...

CEJ45_RS15240 CEJ45_15245 WP_088755932.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

 32% id,
95% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 31% id,
99% cov

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 29% id,
98% cov

More...

CEJ45_RS09745 CEJ45_09755 WP_088754936.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

 31% id,
95% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 31% id,
91% cov

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 31% id,
90% cov

More...

CEJ45_RS08600 CEJ45_08610 WP_088754739.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 28% id,
92% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 26% id,
97% cov

PGA1_c29720: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Phaeobacter inhibens

 25% id,
94% cov

More...

CEJ45_RS16430 CEJ45_16430 WP_088756132.1: FAD/FMN-binding oxidoreductase
is similar to:		 PaperBLAST

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 29% id,
57% cov

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

 26% id,
42% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 35% id,
32% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory