Curated BLAST for Genomes

 

Curated BLAST

Searching in Secundilactobacillus silagei JCM 19001 IWT126 (GCF_002217945.1)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.6' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Secundilactobacillus silagei JCM 19001 IWT126, or try another query

ilvD CES79_RS07305 IWT126_01474 WP_054654462.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

34% id,
93% cov

CES79_RS09555 IWT126_01926 WP_089137032.1: dipeptide epimerase
is similar to:
PaperBLAST

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli

25% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory