Curated BLAST for Genomes

 

Curated BLAST

Searching in Secundilactobacillus silagei JCM 19001 IWT126 (GCF_002217945.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Secundilactobacillus silagei JCM 19001 IWT126, or try another query

tpiA CES79_RS04890 IWT126_00984 WP_054654136.1: triose-phosphate isomerase
is similar to:		 PaperBLAST

tpiA / O32757: triosephosphate isomerase subunit (EC 5.3.1.1) from Lactobacillus delbrueckii

 55% id,
99% cov

tpiA / P50918: triosephosphate isomerase subunit (EC 5.3.1.1) from Lactococcus lactis

 50% id,
99% cov

TPIS_STAAR / Q6GIL6: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Staphylococcus aureus
Q6GIL6: triose-phosphate isomerase (EC 5.3.1.1) from Staphylococcus aureus

 50% id,
100% cov

More...

CES79_RS04885 IWT126_00983 WP_089136490.1: phosphoglycerate kinase
is similar to:		 PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

 56% id,
61% cov

pdxS CES79_RS10670 IWT126_02151 WP_054655835.1: pyridoxal 5'-phosphate synthase lyase subunit PdxS
is similar to:		 PaperBLAST

Q9HLB6: triose-phosphate isomerase (EC 5.3.1.1) from Thermoplasma acidophilum

 26% id,
43% cov

Q97VM8: triose-phosphate isomerase (EC 5.3.1.1) from Saccharolobus solfataricus

 25% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory