Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardiopsis gilva YIM 90087 (GCF_002263495.1)

Found 82 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Nocardiopsis gilva YIM 90087, or try another query

CDO52_RS24670 CDO52_24655 WP_094932740.1: NADP-dependent isocitrate dehydrogenase
is similar to:
PaperBLAST

IDH1_MYCTU / P9WKL1: Isocitrate dehydrogenase [NADP] 1; ICD-1; ICDH-1; IDH 1; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mycobacterium tuberculosis
icd1 / P9WKL1: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Mycobacterium tuberculosis
P9WKL1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis
A5U813: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis

78% id,
99% cov

B7GQR3: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Bifidobacterium longum

74% id,
100% cov

Q6C2Y4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Yarrowia lipolytica

68% id,
98% cov

More...

CDO52_RS22525 CDO52_22510 WP_017621031.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis
icd / GB|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis

31% id,
95% cov

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

33% id,
90% cov

D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda

31% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5058296-5059450 (frame -3) on NZ_CP022753.1 Nocardiopsis gilva YIM 90087 chromosome, complete genome
is similar to:
PaperBLAST

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum
Also see hits to annotated proteins above

32% id,
92% cov

D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda
Also see hits to annotated proteins above

30% id,
99% cov

icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui
Also see hits to annotated proteins above

28% id,
96% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory