Curated BLAST for Genomes

 

Curated BLAST

Searching in Rubrivirga marina SAORIC-28 (GCF_002283365.1)

Found 20 curated entries in PaperBLAST's database that match '1.13.11.5' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Rubrivirga marina SAORIC-28, or try another query

BSZ37_RS15885 BSZ37_15940 WP_095511497.1: cupin domain-containing protein
is similar to:
PaperBLAST

SO1963: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Shewanella oneidensis

46% id,
99% cov

Psest_3513: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas stutzeri

34% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory