Curated BLAST for Genomes

 

Curated BLAST

Searching in Epibacterium ulvae U95 (GCF_002796795.1)

Found 29 curated entries in PaperBLAST's database that match '2.5.1.54' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Epibacterium ulvae U95, or try another query

CV091_RS19330 WP_090221190.1: 3-deoxy-7-phosphoheptulonate synthase
is similar to:
PaperBLAST

AroG / b0754: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
aroG / P0AB91: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
C3TIE2: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Escherichia coli

59% id,
100% cov

Q9K169: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Neisseria meningitidis

53% id,
98% cov

P35170: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Corynebacterium glutamicum

53% id,
97% cov

More...

CV091_RS03245 WP_090217168.1: 3-deoxy-7-phosphoheptulonate synthase class II
is similar to:
PaperBLAST

AROG2_PETHY / A0A067XGX8: Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; DAHP synthase 2; PhDAHP2; Phospho-2-keto-3-deoxyheptonate aldolase 2; EC 2.5.1.54 from Petunia hybrida

58% id,
87% cov

O68903: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Actinosynnema pretiosum

52% id,
95% cov

P29976: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Arabidopsis thaliana

58% id,
85% cov

More...

kdsA CV091_RS06585 WP_090215982.1: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

26% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

540786-541838 (frame +3) on NZ_PHJF01000002.1 Epibacterium ulvae strain U95 Ga0207336_102, whole genome shotgun sequence
is similar to:
PaperBLAST

Echvi_0120: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) from Echinicola vietnamensis

26% id,
65% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory