Curated BLAST for Genomes

 

Curated BLAST

Searching in Epibacterium ulvae U95 (GCF_002796795.1)

Found 2 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthetase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Epibacterium ulvae U95, or try another query

carB CV091_RS06665 WP_090215936.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

60% id,
100% cov

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

45% id,
98% cov

CV091_RS05660 WP_090216502.1: acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

24% id,
31% cov

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

23% id,
27% cov

CV091_RS00725 WP_090218525.1: pyruvate carboxylase
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

23% id,
32% cov

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

23% id,
30% cov

accC CV091_RS05025 WP_090216707.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

23% id,
30% cov

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

23% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory