Curated BLAST for Genomes

 

Curated BLAST

Searching in Pontibacter ramchanderi LP43 (GCF_002846395.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pontibacter ramchanderi LP43, or try another query

lysA BD749_RS13800 BD749_2821 WP_245869218.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

58% id,
96% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

41% id,
93% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

40% id,
93% cov

More...

BD749_RS07650 BD749_1561 WP_101443820.1: aspartate kinase
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

29% id,
42% cov

BD749_RS13795 BD749_2820 WP_101445269.1: aspartate kinase
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

30% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory