Curated BLAST for Genomes

 

Curated BLAST

Searching in Pontibacter ramchanderi LP43 (GCF_002846395.1)

Found 16 curated entries in PaperBLAST's database that match '4.2.1.9' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pontibacter ramchanderi LP43, or try another query

ilvD BD749_RS13355 BD749_2732 WP_180336409.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ILVC_ASPFU / Q4X099: Dihydroxy-acid dehydratase ilvC, mitochondrial; DHAD ilvC; EC 4.2.1.9 from Aspergillus fumigatus

57% id,
94% cov

A0A481UJA7: dihydroxy-acid dehydratase (EC 4.2.1.9) from Hevea brasiliensis

59% id,
90% cov

ILVD_ARATH / Q9LIR4: Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana
Q9LIR4: dihydroxy-acid dehydratase (EC 4.2.1.9) from Arabidopsis thaliana

59% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

149686-151482 (frame -1) on NZ_PJMU01000003.1 Pontibacter ramchanderi strain LP43 Ga0116985_103, whole genome shotgun sequence
is similar to:
PaperBLAST

A0A481UJA7: dihydroxy-acid dehydratase (EC 4.2.1.9) from Hevea brasiliensis
Also see hits to annotated proteins above

58% id,
94% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

47% id,
98% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus
Also see hits to annotated proteins above

46% id,
99% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory