Curated BLAST for Genomes

 

Curated BLAST

Searching in Pontibacter ramchanderi LP43 (GCF_002846395.1)

Found 14 curated entries in PaperBLAST's database that match '4.2.3.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pontibacter ramchanderi LP43, or try another query

aroB BD749_RS15575 BD749_3178 WP_101446022.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

Q8U0A8: 3-dehydroquinate synthase (EC 4.2.3.4) from Pyrococcus furiosus

36% id,
99% cov

Q3M4V2: 3-dehydroquinate synthase (EC 4.2.3.4) from Trichormus variabilis

37% id,
96% cov

AROB_HELPY / P56081: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Helicobacter pylori

38% id,
90% cov

More...

BD749_RS15570 BD749_3177 WP_101446019.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

32% id,
27% cov

BD749_RS10345 BD749_2111 WP_101444266.1: shikimate kinase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

39% id,
5% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory