Curated BLAST for Genomes

 

Curated BLAST

Searching in Pontibacter ramchanderi LP43 (GCF_002846395.1)

Found 17 curated entries in PaperBLAST's database that match '5.3.1.7' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pontibacter ramchanderi LP43, or try another query

BD749_RS13600 BD749_2781 WP_101445201.1: AGE family epimerase/isomerase
is similar to:
PaperBLAST

Sama_0560: D-mannose isomerase (EC 5.3.1.7) from Shewanella amazonensis

28% id,
94% cov

HSERO_RS03650: Mannose isomerase (EC 5.3.1.7) from Herbaspirillum seropedicae

23% id,
97% cov

BPHYT_RS02050: D-mannose isomerase (EC 5.3.1.7) from Burkholderia phytofirmans

24% id,
69% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory