Curated BLAST for Genomes

 

Curated BLAST

Searching in Pontibacter ramchanderi LP43 (GCF_002846395.1)

Found 8 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase small subunit' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pontibacter ramchanderi LP43, or try another query

leuD BD749_RS13370 BD749_2735 WP_101445098.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

LEUD1_SALTY / P04787: 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium

46% id,
97% cov

LEUD_MYCBO / P65278: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

46% id,
95% cov

leuD / BAC65258.1: 3-isopropylmalate dehydratase small subunit from Burkholderia multivorans

45% id,
94% cov

More...

BD749_RS06200 BD749_1270 WP_101443452.1: aconitate hydratase
is similar to:
PaperBLAST

LEUD_MYCBO / P65278: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

27% id,
60% cov

LEUD_RHIJ3 / Q1MA52: 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Rhizobium johnstonii

36% id,
45% cov

leuD / BAC65258.1: 3-isopropylmalate dehydratase small subunit from Burkholderia multivorans

35% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory