Curated BLAST for Genomes

 

Curated BLAST

Searching in Pontibacter ramchanderi LP43 (GCF_002846395.1)

Found 61 curated entries in PaperBLAST's database that match 'Serine hydroxymethyltransferase' as complete word(s).

These curated entries have 49 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pontibacter ramchanderi LP43, or try another query

glyA BD749_RS11795 BD749_2410 WP_101444761.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

6ymdA / I7H6W6: Crystal structure of serine hydroxymethyltransferase from aphanothece halophytica in the covalent complex with malonate

58% id,
97% cov

1kkjA / Q7SIB6: Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus

56% id,
98% cov

GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus

55% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory