Curated BLAST for Genomes

 

Curated BLAST

Searching in Halioglobus japonicus S1-36 (GCF_002869505.1)

Found 11 curated entries in PaperBLAST's database that match '5.4.3.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Halioglobus japonicus S1-36, or try another query

epmB C0029_RS16475 C0029_16465 WP_084197976.1: EF-P beta-lysylation protein EpmB
is similar to:
PaperBLAST

KAMA_CLOSU / Q9XBQ8: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Clostridium subterminale
kamA / Q9XBQ8: lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale

35% id,
77% cov

G3F9W8: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanocalculus chunghsingensis

33% id,
74% cov

G3F9X2: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanohalophilus portucalensis

32% id,
74% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory