Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodococcus qingshengii djl-6-2 (GCF_002893965.1)

Found 29 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Rhodococcus qingshengii djl-6-2, or try another query

xylB C1M55_RS22535 C1M55_22535 WP_050654666.1: xylulokinase
is similar to:
PaperBLAST

Q8NU35: xylulokinase (EC 2.7.1.17) from Corynebacterium glutamicum

54% id,
97% cov

mtlY / Q4KC52: xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

37% id,
91% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

34% id,
95% cov

More...

glpK C1M55_RS10610 C1M55_10610 WP_076949000.1: glycerol kinase GlpK
is similar to:
PaperBLAST

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

28% id,
95% cov

glpK C1M55_RS23175 C1M55_23175 WP_007733474.1: glycerol kinase GlpK
is similar to:
PaperBLAST

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

28% id,
89% cov

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

25% id,
98% cov

C1M55_RS06735 C1M55_06735 WP_228232502.1: Hsp70 family protein
is similar to:
PaperBLAST

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

31% id,
26% cov

C1M55_RS21560 C1M55_21560 WP_208635152.1: Hsp70 family protein
is similar to:
PaperBLAST

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

24% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory