Curated BLAST for Genomes

 

Curated BLAST

Searching in Oceanisphaera arctica V1-41 (GCF_002936955.1)

Found 44 curated entries in PaperBLAST's database that match '6.2.1.1' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Oceanisphaera arctica V1-41, or try another query

acs UN63_RS07990 UN63_07975 WP_104486250.1: acetate--CoA ligase
is similar to:		 PaperBLAST

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

 73% id,
100% cov

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

 73% id,
100% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

 70% id,
99% cov

More...

acsA UN63_RS15435 UN63_15435 WP_104488248.1: acetate--CoA ligase
is similar to:		 PaperBLAST

ACSA_BACSU / P39062: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Bacillus subtilis

 45% id,
99% cov

ACSA_METTP / A0B8F1: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Methanothrix thermoacetophila
A0B8F1: acetate-CoA ligase (EC 6.2.1.1) from Methanothrix thermoacetophila

 40% id,
89% cov

Q2XNL6: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus

 37% id,
93% cov

More...

UN63_RS07610 UN63_07600 WP_104486174.1: acetoacetate--CoA ligase
is similar to:		 PaperBLAST

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

 29% id,
95% cov

ACSA_MYCTU / P9WQD1: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Mycobacterium tuberculosis

 28% id,
97% cov

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

 29% id,
96% cov

More...

UN63_RS11160 UN63_11155 WP_104486846.1: acetoacetate--CoA ligase
is similar to:		 PaperBLAST

ACSA_MYCTU / P9WQD1: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Mycobacterium tuberculosis

 28% id,
97% cov

ACSA_CUPNH / P31638: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Cupriavidus necator
acsA / P31638: acetyl-CoA synthetase (EC 6.2.1.1; EC 6.2.1.17) from Cupriavidus necator

 28% id,
98% cov

Q2XNL6: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus

 28% id,
98% cov

More...

fadD UN63_RS02495 UN63_02480 WP_104485201.1: long-chain-fatty-acid--CoA ligase FadD
is similar to:		 PaperBLAST

CCL4 / M4IQQ5: isobutanoate/2-methylbutanoate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

 29% id,
68% cov

ACSA_BACSU / P39062: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Bacillus subtilis

 29% id,
61% cov

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

 26% id,
69% cov

More...

UN63_RS03685 UN63_03665 WP_229793511.1: AMP-binding protein
is similar to:		 PaperBLAST

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

 25% id,
71% cov

ACS2L_MOUSE / Q99NB1: Acetyl-coenzyme A synthetase 2-like, mitochondrial; Acetate--CoA ligase 2; Acetyl-CoA synthetase 2; AceCS2; Acyl-CoA synthetase short-chain family member 1; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Mus musculus
Q99NB1: acetate-CoA ligase (EC 6.2.1.1) from Mus musculus

 21% id,
70% cov

CCL2 / M4IRL4: isovalerate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

 24% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

21055-23046 (frame +1) on NZ_MPZM01000024.1 Oceanisphaera arctica strain V1-41 contig00024, whole genome shotgun sequence
is similar to:		 PaperBLAST

Q2XNL6: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus
Also see hits to annotated proteins above

 28% id,
99% cov

78114-79892 (frame -1) on NZ_MPZM01000003.1 Oceanisphaera arctica strain V1-41 contig00003, whole genome shotgun sequence
is similar to:		 PaperBLAST

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus
Also see hits to annotated proteins above

 26% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory