Curated BLAST for Genomes

 

Curated BLAST

Searching in Pontimonas salivibrio CL-TW6 (GCF_002950575.1)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pontimonas salivibrio CL-TW6, or try another query

argF C3B54_RS05910 C3B54_111203 WP_104913671.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis
OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis
P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis
P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis

58% id,
100% cov

OTC_MYCS2 / A0QYS8: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycolicibacterium smegmatis

56% id,
100% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

50% id,
96% cov

More...

C3B54_RS05445 C3B54_111102 WP_104913599.1: aspartate carbamoyltransferase catalytic subunit
is similar to:
PaperBLAST

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

29% id,
98% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

29% id,
98% cov

OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum
arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum
Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum

28% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory