Curated BLAST for Genomes

 

Curated BLAST

Searching in Pontimonas salivibrio CL-TW6 (GCF_002950575.1)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pontimonas salivibrio CL-TW6, or try another query

C3B54_RS02335 C3B54_11468 WP_104913070.1: glucosamine-6-phosphate deaminase
is similar to:
PaperBLAST

NAGB_STRCO / Q9K487: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Streptomyces coelicolor

49% id,
99% cov

Shew_0815: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Shewanella loihica

46% id,
93% cov

GAMA_BACSU / O31458: Glucosamine-6-phosphate deaminase 2; GlcN6P deaminase 2; GNPDA 2; Glucosamine-6-phosphate isomerase 2; EC 3.5.99.6 from Bacillus subtilis

41% id,
99% cov

More...

glmS C3B54_RS01720 C3B54_11344 WP_104912972.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

CCNA_00453: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Caulobacter crescentus

31% id,
99% cov

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

31% id,
98% cov

GLMD_THEKO / Q5JDU3: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; EC 3.5.99.6 from Thermococcus kodakarensis
glmD / Q5JDU3: archaeal glucosamine-6-phosphate deaminase subunit (EC 3.5.99.6) from Thermococcus kodakarensis

29% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory