Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium endophyticum PEPV15 (GCF_003010935.1)

Found 60 curated entries in PaperBLAST's database that match '1.1.1.85' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Phyllobacterium endophyticum PEPV15, or try another query

leuB CU100_RS01435 CU100_01435 WP_106714781.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

P24404: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Agrobacterium tumefaciens

81% id,
100% cov

LEU3_ACIFR / Q56268: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Acidithiobacillus ferrooxidans
Q56268: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Acidithiobacillus ferrooxidans

52% id,
98% cov

leuB / P24015: β-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Leptospira interrogans
P24015: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Leptospira interrogans

50% id,
99% cov

More...

CU100_RS22305 CU100_22325 WP_106718831.1: tartrate dehydrogenase
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

68% id,
99% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

45% id,
98% cov

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

45% id,
98% cov

More...

CU100_RS15545 CU100_15570 WP_106717507.1: tartrate dehydrogenase
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

67% id,
98% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

42% id,
97% cov

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

42% id,
97% cov

More...

CU100_RS22300 CU100_22320 WP_106718830.1: tartrate dehydrogenase
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

52% id,
99% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

44% id,
93% cov

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

44% id,
93% cov

More...

CU100_RS22290 CU100_22310 WP_106718829.1: isocitrate/isopropylmalate dehydrogenase family protein
is similar to:
PaperBLAST

P24098: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus aquaticus

38% id,
99% cov

LEU3_THET8 / Q5SIY4: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Thermus thermophilus
Q5SIY4: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

38% id,
100% cov

P61495: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

38% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory