Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium endophyticum PEPV15 (GCF_003010935.1)

Found 36 curated entries in PaperBLAST's database that match '2.6.1.83' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Phyllobacterium endophyticum PEPV15, or try another query

CU100_RS10175 CU100_10200 WP_106716473.1: LL-diaminopimelate aminotransferase
is similar to:		 PaperBLAST

DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus

 43% id,
98% cov

DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica

 42% id,
100% cov

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

 41% id,
99% cov

More...

CU100_RS25195 CU100_25220 WP_106719392.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

 34% id,
96% cov

Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans

 34% id,
95% cov

DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus

 33% id,
98% cov

More...

CU100_RS26240 CU100_26260 WP_106719584.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica

 32% id,
97% cov

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

 31% id,
98% cov

Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans

 31% id,
97% cov

More...

CU100_RS05030 CU100_05045 WP_106715393.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

 30% id,
95% cov

DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica

 29% id,
94% cov

DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans

 30% id,
91% cov

More...

CU100_RS21000 CU100_21020 WP_106718519.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus

 29% id,
98% cov

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

 29% id,
95% cov

Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis

 28% id,
98% cov

More...

CU100_RS10605 CU100_10635 WP_106717219.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

 26% id,
98% cov

DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus

 27% id,
92% cov

DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica

 26% id,
95% cov

More...

CU100_RS08590 CU100_08620 WP_106716187.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans

 27% id,
91% cov

CU100_RS16830 CU100_16850 WP_106717724.1: aminotransferase
is similar to:		 PaperBLAST

DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica
Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica

 26% id,
86% cov

DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus
Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus

 25% id,
90% cov

A0A6P3CW87: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Verrucomicrobium spinosum

 25% id,
89% cov

More...

CU100_RS26200 CU100_26220 WP_106719577.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans

 25% id,
91% cov

hisC CU100_RS23395 CU100_23410 WP_106719054.1: histidinol-phosphate transaminase
is similar to:		 PaperBLAST

Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana

 28% id,
45% cov

DAPAT_ARATH / Q93ZN9: LL-diaminopimelate aminotransferase, chloroplastic; AtDAP-AT; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; Protein ABERRANT GROWTH AND DEATH 2; EC 2.6.1.83 from Arabidopsis thaliana
DAP / Q93ZN9: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana
Q93ZN9: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana

 27% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory