Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium endophyticum PEPV15 (GCF_003010935.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Phyllobacterium endophyticum PEPV15, or try another query

CU100_RS06610 CU100_06635 WP_106715672.1: homoserine kinase
is similar to:
PaperBLAST

Ga0059261_3253: homoserine kinase (EC 2.7.1.39) from Sphingomonas koreensis

47% id,
97% cov

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa

34% id,
98% cov

CU100_RS23485 CU100_23500 WP_106719070.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

29% id,
72% cov

CU100_RS06390 CU100_06415 WP_106715634.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli
ThrB / b0003: homoserine kinase (EC 2.7.1.39) from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC 2.7.1.39 from Escherichia coli
thrB / P00547: homoserine kinase (EC 2.7.1.39) from Escherichia coli

26% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory