Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium endophyticum PEPV15 (GCF_003010935.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Phyllobacterium endophyticum PEPV15, or try another query

thrC CU100_RS06650 CU100_06675 WP_106716046.1: threonine synthase
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

78% id,
100% cov

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

41% id,
100% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC 4.2.3.1 from Corynebacterium glutamicum

42% id,
98% cov

More...

eutB CU100_RS11830 CU100_11875 WP_106716758.1: hydroxyectoine utilization dehydratase EutB
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

29% id,
89% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

30% id,
82% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

28% id,
77% cov

CU100_RS02855 CU100_02855 WP_106715028.1: threonine/serine dehydratase
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

27% id,
84% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

25% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory