Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 23 curated entries in PaperBLAST's database that match '1.1.1.103' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

tdh CU102_RS25640 CU102_25620 WP_106713900.1: L-threonine 3-dehydrogenase
is similar to:
PaperBLAST

TDH_ECOLI / P07913: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli
Tdh / b3616: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
tdh / P07913: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
P07913: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Escherichia coli

72% id,
100% cov

PGA1_c34320: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Phaeobacter inhibens

58% id,
100% cov

O31776: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Bacillus subtilis

43% id,
99% cov

More...

CU102_RS23605 CU102_23590 WP_106713530.1: L-idonate 5-dehydrogenase
is similar to:
PaperBLAST

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

34% id,
97% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

34% id,
97% cov

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

32% id,
98% cov

More...

CU102_RS29015 CU102_28980 WP_106714455.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

YiaY / b3589: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
yiaY / P37686: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli

31% id,
99% cov

adhP CU102_RS26410 CU102_26385 WP_106714048.1: alcohol dehydrogenase AdhP
is similar to:
PaperBLAST

PGA1_c34320: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Phaeobacter inhibens

31% id,
99% cov

TDH_ECOLI / P07913: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli
Tdh / b3616: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
tdh / P07913: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
P07913: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Escherichia coli

30% id,
100% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

30% id,
100% cov

More...

CU102_RS17560 CU102_17545 WP_106712403.1: L-idonate 5-dehydrogenase
is similar to:
PaperBLAST

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

31% id,
96% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

29% id,
100% cov

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

30% id,
98% cov

More...

CU102_RS03105 CU102_03110 WP_106709522.1: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
is similar to:
PaperBLAST

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

28% id,
97% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

27% id,
97% cov

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

28% id,
93% cov

More...

CU102_RS17450 CU102_17435 WP_106712453.1: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

28% id,
99% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

27% id,
99% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

27% id,
99% cov

More...

CU102_RS17905 CU102_17890 WP_106712583.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:
PaperBLAST

PGA1_c34320: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Phaeobacter inhibens

27% id,
100% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

29% id,
90% cov

TDH_ECOLI / P07913: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli
Tdh / b3616: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
tdh / P07913: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
P07913: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Escherichia coli

29% id,
91% cov

More...

CU102_RS04115 CU102_04135 WP_106709687.1: zinc-binding alcohol dehydrogenase family protein
is similar to:
PaperBLAST

O31776: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Bacillus subtilis

29% id,
94% cov

CU102_RS24450 CU102_24430 WP_106713712.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:
PaperBLAST

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

27% id,
98% cov

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

27% id,
98% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

28% id,
93% cov

More...

denD CU102_RS18405 CU102_18385 WP_106712551.1: D-erythronate dehydrogenase
is similar to:
PaperBLAST

Q97BK3: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermoplasma volcanium

26% id,
97% cov

CU102_RS04370 CU102_04390 WP_106709752.1: alcohol dehydrogenase family protein
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

26% id,
95% cov

galE CU102_RS02720 CU102_02720 WP_106709391.1: UDP-glucose 4-epimerase GalE
is similar to:
PaperBLAST

Q7YW97: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Trypanosoma brucei

26% id,
92% cov

TDH_MOUSE / Q8K3F7: L-threonine 3-dehydrogenase, mitochondrial; EC 1.1.1.103 from Mus musculus

23% id,
82% cov

D3ZN15: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Rattus norvegicus

23% id,
52% cov

CU102_RS05875 CU102_05885 WP_106710095.1: zinc-binding dehydrogenase
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

31% id,
77% cov

CU102_RS12255 CU102_12250 WP_106711391.1: NADP-dependent oxidoreductase
is similar to:
PaperBLAST

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

27% id,
72% cov

CU102_RS25745 CU102_25725 WP_106713923.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

D6PBM7: L-threonine 3-dehydrogenase (EC 1.1.1.103) from uncultured archaeon

30% id,
52% cov

CU102_RS26060 CU102_26035 WP_106713978.1: NAD-dependent epimerase/dehydratase family protein
is similar to:
PaperBLAST

Q97BK3: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermoplasma volcanium

27% id,
52% cov

CU102_RS13115 CU102_13110 WP_106711536.1: NADPH:quinone reductase
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

40% id,
22% cov

CU102_RS19745 CU102_19740 WP_245425426.1: alcohol dehydrogenase family protein
is similar to:
PaperBLAST

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

59% id,
8% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

56% id,
8% cov

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

56% id,
8% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 17 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

552381-553382 (frame -1) on NZ_PGGO01000001.1 Phyllobacterium brassicacearum strain STM 196 NODE_1_length_554321_cov_52.8864, whole genome shotgun sequence
is similar to:
PaperBLAST

Q7YW97: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Trypanosoma brucei
Also see hits to annotated proteins above

26% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory