Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

CU102_RS18285 CU102_18265 WP_106712532.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
18% cov

CU102_RS09170 CU102_09190 WP_106710770.1: FAD-binding dehydrogenase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
17% cov

CU102_RS18240 CU102_18220 WP_106712524.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

38% id,
15% cov

CU102_RS19695 CU102_19690 WP_106712802.1: NADH:flavin oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

34% id,
15% cov

CU102_RS06200 CU102_06210 WP_106710149.1: sarcosine oxidase subunit alpha family protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

43% id,
9% cov

CU102_RS29215 CU102_29180 WP_106714487.1: glutamate synthase subunit beta
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

49% id,
8% cov

CU102_RS21115 CU102_21110 WP_106713070.1: TIGR03862 family flavoprotein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

41% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory