Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 33 curated entries in PaperBLAST's database that match '1.5.1.2' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

proC CU102_RS02375 CU102_02375 WP_106709328.1: pyrroline-5-carboxylate reductase
is similar to:
PaperBLAST

CCNA_00528: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Caulobacter crescentus

40% id,
99% cov

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

38% id,
97% cov

G7KRM5: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Medicago truncatula

36% id,
95% cov

More...

CU102_RS04955 CU102_04970 WP_106709892.1: pyrroline-5-carboxylate reductase dimerization domain-containing protein
is similar to:
PaperBLAST

P5CR_METAC / Q9HH99: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Methanosarcina acetivorans

31% id,
97% cov

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

30% id,
97% cov

G7KRM5: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Medicago truncatula

30% id,
96% cov

More...

CU102_RS02140 CU102_02145 WP_106709449.1: pyrroline-5-carboxylate reductase
is similar to:
PaperBLAST

Shew_1136: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Shewanella loihica

21% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory