Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

CU102_RS06090 CU102_06100 WP_106710133.1: B12-binding domain-containing protein
is similar to:
PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

80% id,
98% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

34% id,
27% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

36% id,
24% cov

More...

metH CU102_RS21440 CU102_21435 WP_106713177.1: methionine synthase
is similar to:
PaperBLAST

METH_ECOLI / P13009: Methionine synthase; 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12-dependent; MS; EC 2.1.1.13 from Escherichia coli
MetH / b4019: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli
metH: methionine synthase; EC 2.1.1.13 from Escherichia coli
metH / P13009: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli

63% id,
99% cov

METH_RAT / Q9Z2Q4: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Rattus norvegicus
Q9Z2Q4: methionine synthase (EC 2.1.1.13) from Rattus norvegicus

56% id,
99% cov

METH_HUMAN / Q99707: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Homo sapiens
MTR / Q99707: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Homo sapiens
Q99707: methionine synthase (EC 2.1.1.13) from Homo sapiens

56% id,
99% cov

More...

CU102_RS06130 CU102_06140 WP_245425250.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

57% id,
96% cov

CU102_RS06125 CU102_06135 WP_106710138.1: methyltetrahydrofolate cobalamin methyltransferase
is similar to:
PaperBLAST

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

74% id,
73% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

38% id,
37% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

41% id,
33% cov

More...

bmt CU102_RS06070 CU102_06080 WP_106710129.1: betaine--homocysteine S-methyltransferase
is similar to:
PaperBLAST

PGA1_c13370: Methionine synthase component, methyltransferase domain (EC:2.1.1.13) from Phaeobacter inhibens

54% id,
99% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

37% id,
38% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

36% id,
35% cov

More...

CU102_RS06100 CU102_06110 WP_245425232.1: DUF1638 domain-containing protein
is similar to:
PaperBLAST

PGA1_c13340: Accessory protein for co(II)balamin reduction (DUF1638) (EC:2.1.1.13) from Phaeobacter inhibens

55% id,
80% cov

CU102_RS28645 CU102_28605 WP_106714394.1: homocysteine S-methyltransferase family protein
is similar to:
PaperBLAST

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

28% id,
35% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

27% id,
35% cov

CU102_RS14875 CU102_14865 WP_245425352.1: adenylate/guanylate cyclase domain-containing protein
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

30% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

193970-196114 (frame +2) on NZ_PGGO01000003.1 Phyllobacterium brassicacearum strain STM 196 NODE_3_length_393795_cov_52.8005, whole genome shotgun sequence
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens
Also see hits to annotated proteins above

56% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory