Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 29 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

xylB CU102_RS17150 CU102_17135 WP_106712328.1: xylulokinase
is similar to:
PaperBLAST

SMc03164: Xylulose kinase (EC 2.7.1.17) from Sinorhizobium meliloti

74% id,
99% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

62% id,
100% cov

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

53% id,
99% cov

More...

CU102_RS04445 CU102_04465 WP_106709779.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

31% id,
99% cov

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

31% id,
98% cov

SMc03164: Xylulose kinase (EC 2.7.1.17) from Sinorhizobium meliloti

30% id,
99% cov

More...

glpK CU102_RS17135 CU102_17120 WP_106712325.1: glycerol kinase GlpK
is similar to:
PaperBLAST

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

29% id,
93% cov

CU102_RS17090 CU102_17080 WP_166648481.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

XYLB_LEVBR / P35850: Xylulose kinase; Xylulokinase; EC 2.7.1.17 from Levilactobacillus brevis

25% id,
98% cov

XYLB_ECOLI / P09099: Xylulose kinase; XK; Xylulokinase; 1-deoxy-D-xylulokinase; EC 2.7.1.17; EC 2.7.1.- from Escherichia coli
XylB / b3564: xylulokinase (EC 2.7.1.17) from Escherichia coli
xylB / GB|AAC76588.1: xylulokinase; EC 2.7.1.17 from Escherichia coli
xylB / P09099: xylulokinase (EC 2.7.1.17) from Escherichia coli

25% id,
99% cov

BWI76_RS27020: Xylulose kinase (EC 2.7.1.17) from Klebsiella michiganensis

25% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory