Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 11 curated entries in PaperBLAST's database that match '3.1.1.17' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

CU102_RS21645 CU102_21640 WP_106713164.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

RGN_HUMAN / Q15493: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens
Q15493: gluconolactonase (EC 3.1.1.17) from Homo sapiens

25% id,
97% cov

RGN_RAT / Q03336: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Rattus norvegicus
Rgn / Q03336: gluconolactonase (EC 3.1.1.17) from Rattus norvegicus

26% id,
92% cov

RGN_MOUSE / Q64374: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Mus musculus
Q64374: gluconolactonase (EC 3.1.1.17) from Mus musculus

25% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory