Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 52 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

serB CU102_RS06440 CU102_06450 WP_106710192.1: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

45% id,
97% cov

SERB_POLSJ / Q12A06: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Polaromonas sp.

44% id,
98% cov

SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis

43% id,
94% cov

More...

CU102_RS17875 CU102_17860 WP_106712461.1: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
is similar to:
PaperBLAST

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

35% id,
76% cov

ABIE51_RS06160: phosphoserine phosphatase (EC 3.1.3.3) from Lysobacter sp.

30% id,
76% cov

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

31% id,
68% cov

CU102_RS01130 CU102_01130 WP_106709422.1: histidine phosphatase family protein
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

30% id,
80% cov

ABIE51_RS06160: phosphoserine phosphatase (EC 3.1.3.3) from Lysobacter sp.

33% id,
51% cov

CU102_RS16835 CU102_16825 WP_106712249.1: histidine phosphatase family protein
is similar to:
PaperBLAST

PSPB_HYDTT / D3DFP8: Putative phosphoserine phosphatase 2; PSP 2; PSPase 2; Metal-independent phosphoserine phosphatase 2; iPSP2; O-phosphoserine phosphohydrolase 2; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFP8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

26% id,
91% cov

CU102_RS24620 CU102_24610 WP_106713723.1: haloacid dehalogenase type II
is similar to:
PaperBLAST

PSP_THET2 / Q72H00: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Thermus thermophilus

30% id,
76% cov

serA CU102_RS09940 CU102_09955 WP_106711063.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

34% id,
53% cov

CU102_RS09375 CU102_09390 WP_106710842.1: TIGR01458 family HAD-type hydrolase
is similar to:
PaperBLAST

PSP_BACSU / P94512: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Bacillus subtilis

30% id,
50% cov

kdpB CU102_RS15040 CU102_15030 WP_106711912.1: potassium-transporting ATPase subunit KdpB
is similar to:
PaperBLAST

SERB_YEAST / P42941: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Saccharomyces cerevisiae

23% id,
66% cov

CU102_RS26010 CU102_25985 WP_106713972.1: NAD-dependent formate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

30% id,
46% cov

CU102_RS20070 CU102_20065 WP_166648527.1: heavy metal translocating P-type ATPase
is similar to:
PaperBLAST

SERB_VIBCH / Q9KPM2: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Vibrio cholerae

29% id,
45% cov

CU102_RS13520 CU102_13515 WP_106711636.1: D-glycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

26% id,
49% cov

CU102_RS23600 CU102_23585 WP_106713529.1: 2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

27% id,
44% cov

CU102_RS20960 CU102_20955 WP_106713042.1: glyoxylate/hydroxypyruvate reductase A
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

35% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

229989-230630 (frame -1) on NZ_PGGO01000001.1 Phyllobacterium brassicacearum strain STM 196 NODE_1_length_554321_cov_52.8864, whole genome shotgun sequence
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana
Also see hits to annotated proteins above

30% id,
85% cov

53745-54776 (frame +3) on NZ_PGGO01000009.1 Phyllobacterium brassicacearum strain STM 196 NODE_8_length_212557_cov_53.973, whole genome shotgun sequence
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

25% id,
51% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory