Curated BLAST for Genomes

 

Curated BLAST

Searching in Phyllobacterium brassicacearum STM 196 (GCF_003010955.1)

Found 18 curated entries in PaperBLAST's database that match '3.5.1.18' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Phyllobacterium brassicacearum STM 196, or try another query

dapE CU102_RS13315 CU102_13310 WP_106711603.1: succinyl-diaminopimelate desuccinylase
is similar to:
PaperBLAST

DAPE_VIBCH / Q9KQ52: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Vibrio cholerae
Q9KQ52: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Vibrio cholerae

41% id,
99% cov

DAPE_NEIMB / Q9JYL2: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis
Q9JYL2: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Neisseria meningitidis

42% id,
95% cov

DAPE_ECOLI / P0AED7: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Escherichia coli
MsgB / b2472: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli
dapE / RF|NP_416967: succinyl-diaminopimelate desuccinylase; EC 3.5.1.18 from Escherichia coli
dapE / P0AED7: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli

40% id,
99% cov

More...

CU102_RS09815 CU102_09830 WP_106711061.1: M20 aminoacylase family protein
is similar to:
PaperBLAST

Echvi_1427: putative N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) from Echinicola vietnamensis

39% id,
96% cov

CU102_RS10055 CU102_10070 WP_106710957.1: M20 aminoacylase family protein
is similar to:
PaperBLAST

Echvi_1427: putative N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) from Echinicola vietnamensis

37% id,
94% cov

CU102_RS03460 CU102_03470 WP_106709577.1: M20 aminoacylase family protein
is similar to:
PaperBLAST

Echvi_1427: putative N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) from Echinicola vietnamensis

35% id,
95% cov

CU102_RS05900 CU102_05910 WP_106710100.1: acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein
is similar to:
PaperBLAST

DAPE_NEIMB / Q9JYL2: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Neisseria meningitidis
Q9JYL2: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Neisseria meningitidis

28% id,
98% cov

DAPE_SALTY / Q8ZN75: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; Aspartyl peptidase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Salmonella typhimurium

29% id,
95% cov

DAPE_ECOLI / P0AED7: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Escherichia coli
MsgB / b2472: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli
dapE / RF|NP_416967: succinyl-diaminopimelate desuccinylase; EC 3.5.1.18 from Escherichia coli
dapE / P0AED7: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli

29% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory